programme biologie moléculaire

UNIVERSITÉ DE MONTRÉAL
Faculté des études supérieures
Programmes de biologie moléculaire

SITES D'INTÉRÊT EN BIOLOGIE MOLÉCULAIRE

I     PROTEINS & PROTEOMICS

Protein Family Database: http://www.hgmp.mrc.ac.uk/GenomeWeb/prot-family.html

IMB Jena Image Library of Biological Macromolecules: http://www.imb-jena.de/IMAGE.html
information on three-dimensional biopolymer structures with an emphasis on visualization and analysis

Biomolecular Interaction Network Database.: http://bioinfo.mshri.on.ca/cgi-bin/bind/dataman



II GENETIC NETWORKS

Genes Network Database:

          EmbryoNet - Genetic Networks Controlling Development
          SSE - Genetic Networks Controlling Stress Response in Eukaryotes
          Genetic Network Maps:    http://www.csa.ru/Inst/gorb_dep/inbios/genet/genet_br.htm

Model systems: Drosophila

          1.   Flybase: http://chipmunk.bio.indiana.edu:7081/

          2.   The Interactive Fly: http://sdb.bio.purdue.edu/fly/aimain/1aahome.htm
                Excellent description of mammalian homologs

          3.   Berkeley Drosophila Genome Project: http://www.fruitfly.org/index.html

          4.   The Drosophila virtual library: http://ceolas.org/fly/

III NUCLEIC ACIDS AND CHROMATIN

BoxShade Server: http://www.ch.embnet.org/software/BOX_form.html :
Permet la représentation graphique (en boite noire et grise) d'alignements de séquences générées par le
programme ''pileup'' de GCG.

TRANSFAC - The Transcription Factor Database: Classification, Search for potential transcription factor binding sites
in your own sequences: http://bioinformatics.weizmann.ac.il/transfac/index.html

Chromatin structure and function: http://www.cstone.net/~jrb7q/chrom.html

chromatin structure, proteins that modify chromatin structure, and the effects that these modifications have on cell function.
This site is continuously updated

IV   DEVELOPMENT, DIFFERENTIATION AND GENE REGULATION

Cre transgenic database: http://www.mshri.on.ca/nagy/cre.htm

Transgenic and Targeted Mutant Mice: http://lena.jax.org/resources/documents/imr/

Early mouse development: 3-D images:   http://www.med.unc.edu/embryo_images

Dynamic development and movie of progressive stages of mouse development from 9 days gestation to birth:
http://www.ucalgary.ca/UofC/eduweb/virtualembryo/dev_biol.html

GeNet-Gene Networks Database: http://www.csa.ru/Inst/gorb_dep/inbios/genet/genet.htm

Transcription regulatory regions database: http://www.mgs.bionet.nsc.ru/mgs/dbases/trrd4/

The promoter database of Saccharomyces cerevisiae: http://cgsigma.cshl.org/jian/

Molecular bioinformatics of gene regulation (TRANSFAC): http://transfac.gbf.de/

V   BIOINFORMATIC

Bioinformatic: http://www.ircm.qc.ca/ext/ircm/sites/recherch.htm

VI PROTOCOLS

Protocols for Embryonic stem cells: http://www.mshri.on.ca/nagy/Protcollection.html
        R1 ES cells , Diploid embryo <-> ES cell aggregation chimeras
        Tetraploid embryo <-> ES cell aggregation chimeras
        Other protocols

Protocols online: http://www.protocol-online.net

OTHERS

Pedro's Biomolecular Research tools: http://www.public.iastate.edu/~pedro/research_tools.html

Signal transduction knowledge environment: http://www.stke.org/index.dtl
Weekly Update on signal transduction

Molecular Biology Resources: http://www.cbr.nrc.ca/cmsmbr.ResTools/cmshp.html

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